ZOOM Lite v1.5
ZOOM Lite is a next-generation sequencing data mapping and visualization software. Users input reference genomes and Illumina/Solexa short reads files or AB SOLiD color space reads files in various formats, such as *.fasta, *.fastq, *_seq.txt, *.csfasta etc. ZOOM outputs the mapping results of these short reads on the reference sequence. ZOOM Lite has a fast and accurate mapping kernel based on a newly designed multiple spaced seeds theory. Both single-end and paired-end reads of various lengths from 15bp to 240bp can be handled. Any number of mismatches and one insertion/deletion of various lengths between the read and its target region on the reference sequence are allowed. Uniquely mapped results or best (top N) results for each read will be reported according to the minimal mismatches and indel length. Quality scores are utilized to enhance mapping accuracy. Based on the mapping kernel, ZOOM Lite allows users to load local read data and reference sequence data, select proper parameters, process high volume data in parallel among up to four CPUs, monitor the running tasks, store the mapping results, view the graphs of mapping results and output mapping results in either *.BED or *.GFF file formats for further surveying with the UCSC browser track information. Mapping results can be viewed in any desired scale, from the read depth graph over an entire chromosome to detailed sequence alignments between reads and the reference sequence. Users easily navigate to regions of interest simply via click and drag or scrolling. ZOOM Lite is a derivative of the ZOOM Studio software.
sequencing, visualize, interest, color space, navigate, designed, accurate, parameters, file formats, multiple, parallel, millions, sequence, derivative, surveying, reference, data mapping, ZOOM Lite, detailed, visualization
Programs similar to ZOOM Lite
|Tree Diagram Generator||October 27, 2005|
Tree Diagram Generator is a mathematical tool, aimed at students, teachers, and examiners who wish to avoid the hassle of drawing complex probability tree diagrams by hand. With a real-time point-and-click interface, you can create any number of stems and directly input probabilities and labels onto the canvas.
|File size: 2.87Mb||License: Shareware||Details|
|NCBI Blaster- NCBI BLAST automation tool||August 31, 2012|
NCBI BLAST is a bioinformatics software used to find regions of similarity betwe
|File size: 2.21Mb||License: Freeware||Details|
Investigate science, mathematics, computing, and technology using powerful 3D modeling.
|File size: 57.8Mb||License: Freeware||Details|
|Random Intelligence Test||January 01, 2015|
Dependence of IQ on time makes random IQ tests the only means to measure IQ.
|File size: 0.03Mb||License: Freeware||Details|
|MegAlign||February 19, 2006|
lasergene module to align DNA &protein sequences
|Seq Format Converter (64-bit)||August 09, 2013|
The UK Horse Racing Analyser the professional horse racing analysis software, to accurately predict the outcome for 20 UK Flat and National Hunt Jump races every day. Benefits of using UK Horse Racing Analyser: You can make safe bets with less risk, a one off purchase cost, with NO annual license fees, no need to sign up to monthly or annual data update subscriptions, license activation key can be moved from computer to computer when required, no requirement for large database installations, so less disk...
|File size: 70.154296875Mb||License: Free||Details|
lasergene module to edit/import DNA &protein sequences
|GraphPad Prism||September 30, 2014|
Run the scientific graphing, curve fitting and statistics.
|File size: 32.4Mb||License: Update||Details|
|GS+ Geostatistics for the Environmental Science||February 01, 2008|
Explore spatial relationships in environmental data.
|File size: 22.7Mb||License: Shareware||Details|
|PLC Training - RSlogix Simulator||September 19, 2007|
PLC training - PLCTrainer CBT, tutorial, logic simulator.
|File size: 28.39Mb||License: Demo||Details|